Monthly Archives: June 2016

Generating confocal data from ideal signal

Left: cytosim simulation of a platelet marginal band. Right : simulated confocal stack. A large issue in image analysis is to make sure that the segmentation and analysis procedure does not create artifacts or misrepresents the data in any way. … Continue reading

Posted in Code, Image analysis, Simulations | Leave a comment

Spindle analysis GUI

In the article “Spindle assembly on immobilized chromatin micropatterns”, we observe reconstituted meiosis spindles in live microscopy.¬†This our method generates a large set of data, with many spindles, the dynamics of which we want to quantify. For this, I developed … Continue reading

Posted in Cell Biology, Code, Image analysis | Leave a comment

Python utilities

I decided to upload¬†my most commonly used Python utilities to Github. : You’ll find there : Reading/writing array from/to file Running bash jobs from python and returning output File text cleanup and parsing And a bit more…

Posted in Code, Misc | Leave a comment