Monthly Archives: June 2016
Generating confocal data from ideal signal
Left: cytosim simulation of a platelet marginal band. Right : simulated confocal stack. A large issue in image analysis is to make sure that the segmentation and analysis procedure does not create artifacts or misrepresents the data in any way. … Continue reading
Spindle analysis GUI
In the article “Spindle assembly on immobilized chromatin micropatterns”, we observe reconstituted meiosis spindles in live microscopy. This our method generates a large set of data, with many spindles, the dynamics of which we want to quantify. For this, I developed … Continue reading
Python utilities
I decided to upload my most commonly used Python utilities to Github. : https://github.com/SergeDmi/Python-Tools You’ll find there : Reading/writing array from/to file Running bash jobs from python and returning output File text cleanup and parsing And a bit more…