Monthly Archives: June 2016

Generating confocal data from ideal signal

Posted on June 27, 2016 by SergeDmi

Left: cytosim simulation of a platelet marginal band. Right : simulated confocal stack. A large issue in image analysis is to make sure that the segmentation and analysis procedure does not create artifacts or misrepresents the data in any way. … Continue reading →

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Spindle analysis GUI

Posted on June 24, 2016 by SergeDmi

In the article “Spindle assembly on immobilized chromatin micropatterns”, we observe reconstituted meiosis spindles in live microscopy. This our method generates a large set of data, with many spindles, the dynamics of which we want to quantify. For this, I developed … Continue reading →

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Python utilities

Posted on June 24, 2016 by SergeDmi

I decided to upload my most commonly used Python utilities to Github. : https://github.com/SergeDmi/Python-Tools You’ll find there : Reading/writing array from/to file Running bash jobs from python and returning output File text cleanup and parsing And a bit more…

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