Category Archives: Simulations

Simulations of Yeast Endocytosis

Posted on August 16, 2018 by SergeDmi

Video from https://doi.org/10.1016/j.cell.2018.06.032 In a paper published recently, we showed that actin nucleator are patterned on the membrane before and during the endocytic event. In particular, actin nucleators form a ring on the membrane around its attachment to the actin … Continue reading →

Posted in Cell Biology, Modeling, Simulations | Leave a comment

The Cytosim music video

Posted on July 25, 2016 by SergeDmi

Every year, during “lab day” EMBL has a contest of fun posters,  that depict the lab in a funny way, while mentioning the lab scientific activity. It is a great way to unleash one’s creativity while reaching out to the whole … Continue reading →

Posted in Code, Misc, Simulations | Leave a comment

Generating confocal data from ideal signal

Posted on June 27, 2016 by SergeDmi

Left: cytosim simulation of a platelet marginal band. Right : simulated confocal stack. A large issue in image analysis is to make sure that the segmentation and analysis procedure does not create artifacts or misrepresents the data in any way. … Continue reading →

Posted in Code, Image analysis, Simulations | Leave a comment